References

• T. Lemane, N. Lezzoche, J. Lecubin, E. Pelletier, M. Lescot, R. Chikhi, P. Peterlongo (2024). Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA. Nature Computational Science 10.1038/s43588-024-00596-6

• T. Lemane, N. Lezzoche, J. Lecubin, E. Pelletier, M. Lescot, R. Chikhi, P. Peterlongo (2023). kmindex and ORA: indexing and real-time user-friendly queries in terabytes-sized complex genomic datasets. bioRxiv 2023.05.31.543043. doi: 10.1101/2023.05.31.543043

• C. Vernette, J. Lecubin, P. Sanchez, Tara Oceans Coordinators, S. Sunagawa, T.O. Delmont, S.G. Acinas, E. Pelletier, P. Hingamp, M. Lescot (2022) . The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. Nucleic Acides Research. doi: 10.1093/nar/gkac420.

• E. Villar, T. Vannier, C. Vernette, M. Lescot, M. Cuenca, A. Alexandre, P. Bachelerie, T. Rosnet, E. Pelletier, S. Sunagawa and P. Hingamp (2018). The Ocean Gene Atlas: exploring the biogeography of plankton genes online. Nucleic Acids Research. doi: 10.1093/nar/gky376

• Robidou, Lucas, and Pierre Peterlongo. findere: fast and precise approximate membership query. String Processing and Information Retrieval: 28th International Symposium, SPIRE 2021.

• Téo Lemane, Paul Medvedev, Rayan Chikhi, and Pierre Peterlongo. kmtricks: Efficient and flexible construction of bloom filters for large sequencing data collections. Bioinformatics Advances, 2022.